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SRX26162736: Nipah Virus Transmission in Bangladesh
1 OXFORD_NANOPORE (MinION) run: 24,499 spots, 16.2M bases, 14.8Mb downloads

Design: We collected samples from a human throat swab and used the QIAamp Viral RNA Mini Kit to extract viral RNA
Submitted by: International Centre for Diarrheal Disease Research, Bangladesh (icddr,b)
Study: Henipavirus nipahense strain:NiV-BD Raw sequence reads
PRJNA1163683 • SRP534051 • All experiments • All runs
show Abstracthide Abstract
Developed a culture-independent high-throughput whole genome sequencing (WGS) protocol using Oxford Nanopore Technology.This optimized workflow developed in this study successfully achieved over 95% genome coverage within 24 hours, even from samples with low viral concentrations.
Sample:
SAMN43866866 • SRS22708454 • All experiments • All runs
Organism: Henipavirus nipahense
Library:
Name: icddrb-OHL-RS0644723
Instrument: MinION
Strategy: RNA-Seq
Source: VIRAL RNA
Selection: PCR
Layout: SINGLE
Runs: 1 run, 24,499 spots, 16.2M bases, 14.8Mb
Run# of Spots# of BasesSizePublished
SRR3076019224,49916.2M14.8Mb2024-09-22

ID:
35311807

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